PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G29590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 600aa    MW: 61957.5 Da    PI: 6.6285
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G29590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30333391259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  OGLUM02G29590.1 333 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 391
                      699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109327393IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-31327393IPR003657WRKY domain
SuperFamilySSF1182904.32E-26330393IPR003657WRKY domain
SMARTSM007741.4E-37332392IPR003657WRKY domain
PfamPF031061.4E-25334391IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MIHPLMSSLP PLHLSFLLFF LSFRTYKTAL SILSLSLVSQ QFCPLPLGAR LLAGFTQHYT  60
TTSIIVLLPS RASERERERE RERGGGGGGG QIIMCDYFLQ RMEGEQAAGD LADIVLRAGG  120
AAAAAVAGGG IPSTEWQLPP AEEEEEEPGF FPLPPSSSDG SGMSGADAFG DPFAGLPDPF  180
GGDYPSSSGG AAAAADFFDA VVAKAGFVDV GVLGGGGGGG CDGGGVDGGG GGSSLLGMSK  240
PILPRAAMQL PSVSPRAIRP YPVMAGDTVK LGAPMAGGPC AFDGAAAAGL HMSSSPRGAV  300
GGIKRRKNQA RKVVCIPAPA AAGGRTSGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS  360
SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSHHAKN SSSNSSSSGA  420
SSASKNNSSH SGYHHQKPLV KAEPNDQSAA AAAATTAATV PVKEEAAMVG TSSEALAKTT  480
QKSMEDAAAA ASATAAAVEH SDLMQQMFSQ SYRPMIPEAA AGGHHDDFFA DLAELESDPM  540
SLIFSKEYMA TNYKPAGDPA GKEMNAVDKG LDPAYMLDWS STTVVTRAGG SSFMQGEGGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-183313931374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731000.0AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624748.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A0D9YWV90.0A0A0D9YWV9_9ORYZ; Uncharacterized protein
STRINGORGLA02G0248500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.19e-66WRKY DNA-binding protein 35